Multiple Contributors (2007)
Roll Credits: Sometimes the Authorship Byline Isn't Enough"
PLoS Blog.
JJ Faith, ME Driscoll, VA Fusaro, EJ Cosgrove, B Hayete, FS Juhn, SJ Schneider, and TS Gardner (2007)
Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata.
Nucleic Acids Research, doi: 10.1093/nar/gkm815.[html]
JJ Faith, AJ Olson, TS Gardner, R Sachidanandam (2007)
Lightweight Genome Viewer: portable software for browsing genomics data in its chromosomal context.
BMC Bioinformatics, 8, 344. [html]
ME Driscoll, MF Romine, FS Juhn, MH Serres, LA McCue, AS Beliaev, JK Fredrickson, TS Gardner (2007)
Identification of Diverse Carbon Source Utilization Pathways in Shewanella oneidensis MR-1 via Expression Profiling.
Genome Informatics, accepted.
B Hayete, TS Gardner, JJ Collins (2007)
Size matters: network inference tackles the genome scale.
Molecular Systems Biology, 3, 77.
JJ Faith, B Hayete, JT Thaden, I Mogno, J Wierzbowski, G Cottarel, S Kasif, JJ Collins, TS Gardner (2007)
Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles.
PLoS Biology, 5, 54 - 66. [supplement]
H Xing & TS Gardner (2006)
The mode-of-action by network identification (MNI) algorithm: a network biology approach for molecular target identification.
Nature Protocols, 1, 2551-2554. [html]
ME Driscoll, TS Gardner (2006)
Identification and control of gene networks in living organisms via supervised and unsupervised learning.
Journal of Process Control, 16, 303-311.
D di Bernardo, MJ Thompson, TS Gardner, SE Chobot, EL Eastwood, AP Wojtovich, SJ Elliott, SE Schaus & JJ Collins (2005)
Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks.
Nature Biotechnology, 23(3), 377-383. [supplement]
TS Gardner & J Faith (2005)
Reverse-engineering transcription control networks.
Physics of Life Reviews 2, 65-88.
M Kaern, H Kobayashi, M Araki, K Chung, TS Gardner, CR Cantor & JJ Collins (2004)
Programmable Cells: Interfacing Natural and Engineered Gene Networks.
Proc. Natl. Acad. Sci. USA, 101, 8414-8419.
TS Gardner, S Shimer, JJ Collins (2004)
Inferring microbial genetic networks.
ASM News, 70, 121-126.
D di Bernardo, TS Gardner & JJ Collins (2004)
Robust Identification of large genetic networks.
Proceedings of the Pacific Symposium on Biocomputing, 9, 486-497.
M Driscoll, TS Gardner (2004)
Identification and Control of Genetic Networks in Living Organisms via Supervised and Unsupervised Learning.
Proceedings of the 7th International Symposium on Dynamics and Control of Process Systems, July 2004.
TS Gardner, D di Bernardo, D Lorenz & JJ Collins (2003)
Inferring genetic networks and identifying compound mode of action via expression profiling.
Science, 301, 102-105. [supplement]
TS Gardner (2001)
Genetic Applets: biological integrated circuits for cellular control. IEEE International Solid-State Circuits Conference: Digest of Technical Papers, 44, 112-113.
TS Gardner (2000)
Design and construction of synthetic gene regulatory networks.
PhD dissertation, Boston University College of Engineering.
TS Gardner & JJ Collins (2000)
Neutralizing noise in gene networks
Nature, 405, 520-521.
TS Gardner, CR Cantor & JJ Collins (2000)
Construction of a genetic toggle switch in Escherichia coli.
Nature, 403, 339-342. [supplement]
M Dolnik, TS Gardner, IR Epstein & JJ Collins (1999)
Frequency control of an oscillatory reaction by reversible binding of an autocatalyst.
Phys. Rev. Lett., 82, 1582-1585.
TS Gardner, M Dolnik & JJ Collins (1998)
A theory for controlling cell cycle dynamics using a reversibly binding inhibitor.
Proc. Natl. Acad. Sci. USA, 95, 14190-14195. |
